{ "version": "1.0", "pyramids": [ { "id": "banc", "label": "BANC \u2014 Drosophila central nervous system connectome (~135k neurons)", "kind": "3d", "tilejson": "datasets/banc/tilejson.json", "features": "tiles/banc/features.parquet/", "tiles": 1037, "feature_count": 134942, "summary": "The complete BANC connectome \u2014 ~135,000 neurons spanning the whole adult FEMALE Drosophila central nervous system (brain + ventral nerve cord) in one specimen.", "license": "CC BY-NC 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "drosophila", "banc", "whole-cns" ], "featured": true, "organism": "Drosophila melanogaster", "sex": "Female", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/banc.html", "citation": "Bates AS, Phelps JS, Kim M, Yang HH, et al. & the BANC-FlyWire Consortium. Distributed control circuits across a brain-and-cord connectome. Nature (2026) doi:10.1038/s41586-026-10735-w (preprint: bioRxiv 2025.07.31.667571). EM substrate by Phelps & Kim (Wei-Chung Allen Lee lab, Harvard); segmentation by Zetta.ai. BANC v888 public snapshot, CC BY-NC 4.0." }, { "id": "codex-bone-marrow", "label": "CODEX \u2014 Human Bone Marrow", "kind": "2d", "tilejson": "datasets/codex-bone-marrow/tilejson.json", "features": "tiles2d/codex-bone-marrow/features.parquet/", "tiles": 12385, "feature_count": 107434, "size_bytes": 755998822, "summary": "Multiplexed protein imaging of human bone marrow by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "FFPE", "condition": "n/a", "tissue": "Bone marrow", "html": "datasets/codex-bone-marrow.html", "citation": "HuBMAP Consortium. CODEX human bone marrow (0e0384ccb86ccbadc178c2b484807122)." }, { "id": "codex-large-intestine", "label": "CODEX \u2014 Human Large Intestine", "kind": "2d", "tilejson": "datasets/codex-large-intestine/tilejson.json", "features": "tiles2d/codex-large-intestine/features.parquet/", "tiles": 4063, "feature_count": 38176, "size_bytes": 256058633, "summary": "Multiplexed protein imaging of human large intestine by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Colon / large intestine", "html": "datasets/codex-large-intestine.html", "citation": "HuBMAP Consortium. CODEX human large intestine (01510a4fb90fd303bd48c4cd51cdd14c)." }, { "id": "codex-lung", "label": "CODEX \u2014 Human Lung", "kind": "2d", "tilejson": "datasets/codex-lung/tilejson.json", "features": "tiles2d/codex-lung/features.parquet/", "tiles": 20483, "feature_count": 198892, "size_bytes": 1332389912, "summary": "Multiplexed protein imaging of human lung by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "FFPE", "condition": "n/a", "tissue": "Lung", "html": "datasets/codex-lung.html", "citation": "HuBMAP Consortium. CODEX human lung (70637954487c4f20828b30841b68f1e5)." }, { "id": "codex-lymph-node", "label": "CODEX \u2014 Human Lymph Node", "kind": "2d", "tilejson": "datasets/codex-lymph-node/tilejson.json", "features": "tiles2d/codex-lymph-node/features.parquet/", "tiles": 3909, "feature_count": 121135, "size_bytes": 446043080, "summary": "Multiplexed protein imaging of human lymph node by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "FFPE", "condition": "n/a", "tissue": "Lymph node", "html": "datasets/codex-lymph-node.html", "citation": "HuBMAP Consortium. CODEX human lymph node (5a9c10551a193819aeb3d243824d85e4)." }, { "id": "codex-small-intestine", "label": "CODEX \u2014 Human Small Intestine", "kind": "2d", "tilejson": "datasets/codex-small-intestine/tilejson.json", "features": "tiles2d/codex-small-intestine/features.parquet/", "tiles": 3838, "feature_count": 35411, "size_bytes": 270458746, "summary": "Multiplexed protein imaging of human small intestine by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Small intestine", "html": "datasets/codex-small-intestine.html", "citation": "HuBMAP Consortium. CODEX human small intestine (a61523fefe63ff37760a30ff34e53b5f)." }, { "id": "codex-spleen", "label": "CODEX \u2014 Human Spleen", "kind": "2d", "tilejson": "datasets/codex-spleen/tilejson.json", "features": "tiles2d/codex-spleen/features.parquet/", "tiles": 4068, "feature_count": 175021, "size_bytes": 774768052, "summary": "Multiplexed protein imaging of human spleen by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "FFPE", "condition": "n/a", "tissue": "Spleen", "html": "datasets/codex-spleen.html", "citation": "HuBMAP Consortium. CODEX human spleen (a689dace3e9945b87c8743a6c3c4744e)." }, { "id": "codex-thymus", "label": "CODEX \u2014 Human Thymus", "kind": "2d", "tilejson": "datasets/codex-thymus/tilejson.json", "features": "tiles2d/codex-thymus/features.parquet/", "tiles": 3852, "feature_count": 59017, "size_bytes": 335015491, "summary": "Multiplexed protein imaging of human thymus by CODEX/PhenoCycler, segmented into single cells with a per-cell antibody-marker intensity profile.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-if", "codex", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CODEX/PhenoCycler", "prep": "FFPE", "condition": "n/a", "tissue": "Thymus", "html": "datasets/codex-thymus.html", "citation": "HuBMAP Consortium. CODEX human thymus (e6ecab7095635ea97faaf25c55c48f95)." }, { "id": "cosmx-melanoma", "label": "CosMx \u2014 Human Skin Melanocytic Tumor (+ IF)", "kind": "2d", "tilejson": "datasets/cosmx-melanoma/tilejson.json", "features": "tiles2d/cosmx-melanoma/features.parquet/", "tiles": 65051, "feature_count": 64277, "size_bytes": 711625237, "summary": "Subcellular spatial transcriptomics of human melanocytic tumors by CosMx SMI, with cells segmented over a multiplexed immunofluorescence morphology mosaic.", "license": "CC0-1.0", "tags": [ "spatial-transcriptomics", "cosmx", "smi", "nanostring", "single-cell", "immunofluorescence", "subcellular", "melanoma", "cancer" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CosMx", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Skin", "html": "datasets/cosmx-melanoma.html", "citation": "Spatial profiling of benign and malignant melanocytic tumors via RNA-SMI (CosMx). Dryad. doi:10.5061/dryad.ksn02v7b1" }, { "id": "cosmx-wtx-pancreas", "label": "CosMx \u2014 Human Pancreas (+ IF)", "kind": "2d", "tilejson": "datasets/cosmx-wtx-pancreas/tilejson.json", "features": "tiles2d/cosmx-wtx-pancreas/features.parquet/", "tiles": 19960, "feature_count": 48951, "size_bytes": 831210641, "summary": "Subcellular whole-transcriptome spatial profiling of human pancreas by CosMx SMI, with cells segmented over a multiplexed immunofluorescence morphology mosaic.", "license": "For Research Use Only (NanoString/Bruker public release; no explicit data license stated)", "tags": [ "spatial-transcriptomics", "cosmx", "smi", "nanostring", "single-cell", "immunofluorescence", "subcellular" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "CosMx", "prep": "FFPE", "condition": "n/a", "tissue": "Pancreas", "html": "datasets/cosmx-wtx-pancreas.html", "citation": "NanoString/Bruker Spatial Biology. CosMx SMI WTx Human Pancreas flat files." }, { "id": "flywire", "label": "FlyWire \u2014 Drosophila brain connectome (~139k neurons)", "kind": "3d", "tilejson": "datasets/flywire/tilejson.json", "features": "tiles/flywire/features.parquet/", "tiles": 1423, "feature_count": 139244, "summary": "The complete FlyWire connectome of an adult female fruit-fly brain \u2014 ~139,000 reconstructed neurons across every super class, from the FAFB serial-section EM volume.", "license": "CC BY-NC 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "drosophila", "whole-brain", "flywire" ], "featured": true, "organism": "Drosophila melanogaster", "sex": "Female", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/flywire.html", "citation": "Dorkenwald S, et al. Neuronal wiring diagram of an adult brain. Nature 634:124-138 (2024) doi:10.1038/s41586-024-07558-y; Schlegel P, et al. Whole-brain annotation and multi-connectome cell typing of Drosophila. Nature 634:139-152 (2024) doi:10.1038/s41586-024-07686-5; Zheng Z, et al. A complete EM volume of the adult Drosophila brain. Cell 174:730-743 (2018). FlyWire 783 public release, CC BY-NC 4.0." }, { "id": "hemibrain", "label": "Hemibrain \u2014 Drosophila central brain connectome (~25k neurons)", "kind": "3d", "tilejson": "datasets/hemibrain/tilejson.json", "features": "tiles/hemibrain/features.parquet/", "tiles": 461, "feature_count": 25000, "summary": "Dense FIB-SEM reconstruction of 25,000 neurons from the Janelia FlyEM Hemibrain connectome of the adult female Drosophila central brain.", "license": "CC BY 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "drosophila", "hemibrain" ], "featured": true, "organism": "Drosophila melanogaster", "sex": "Female", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/hemibrain.html", "citation": "Scheffer LK, et al. A connectome and analysis of the adult Drosophila central brain. eLife 9:e57443 (2020). Janelia FlyEM Hemibrain v1.2.1, CC BY 4.0." }, { "id": "hra-female", "label": "HRA \u2014 Human female body (3D reference anatomy)", "kind": "3d", "tilejson": "datasets/hra-female/tilejson.json", "features": "tiles/hra-female/features.parquet/", "tiles": 1189, "feature_count": 795, "summary": "795 anatomical structures of the female body, assembled in the HRA Common Coordinate Framework.", "license": "CC BY 4.0", "tags": [ "anatomy", "hra", "hubmap", "ccf", "3d-tiles" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "3D reference anatomy", "condition": "n/a", "tissue": "Whole body", "html": "datasets/hra-female.html", "citation": "HuBMAP Human Reference Atlas \u2014 CCF 3D Reference Object Library v1.3 (CC BY 4.0); reference geometry from the NLM Visible Human female." }, { "id": "hra-male", "label": "HRA \u2014 Human male body (3D reference anatomy)", "kind": "3d", "tilejson": "datasets/hra-male/tilejson.json", "features": "tiles/hra-male/features.parquet/", "tiles": 1564, "feature_count": 761, "summary": "761 anatomical structures of the male body, assembled in the HRA Common Coordinate Framework.", "license": "CC BY 4.0", "tags": [ "anatomy", "hra", "hubmap", "ccf", "3d-tiles" ], "featured": true, "organism": "Homo sapiens", "sex": "Male", "technique": "3D reference anatomy", "condition": "n/a", "tissue": "Whole body", "html": "datasets/hra-male.html", "citation": "HuBMAP Human Reference Atlas \u2014 CCF 3D Reference Object Library v1.3 (CC BY 4.0); reference geometry from the NLM Visible Human male." }, { "id": "malecns-courtship", "label": "MaleCNS \u2014 Drosophila courtship circuit (sexually dimorphic, ~2k neurons)", "kind": "3d", "tilejson": "datasets/malecns-courtship/tilejson.json", "features": "tiles/malecns-courtship/features.parquet/", "tiles": 985, "feature_count": 2014, "summary": "~2,000 sexually-dimorphic neurons of the male fly CNS \u2014 the male-specific & dimorphic circuitry that drives courtship and reproduction.", "license": "CC BY 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "drosophila", "male-cns", "courtship", "sexual-dimorphism" ], "featured": false, "organism": "Drosophila melanogaster", "sex": "Male", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/malecns-courtship.html", "citation": "Berg S, Beckett IR, Costa M, Schlegel P, Januszewski M, Marin EC, Nern A, Preibisch S, Qiu W, Takemura S, et al. Sexual dimorphism in the complete connectome of the Drosophila male central nervous system. bioRxiv (2025) doi:10.1101/2025.10.09.680999. Janelia FlyEM MaleCNS v0.9, CC BY 4.0." }, { "id": "malecns", "label": "MaleCNS \u2014 Drosophila central nervous system connectome (~177k neurons)", "kind": "3d", "tilejson": "datasets/malecns/tilejson.json", "features": "tiles/malecns/features.parquet/", "tiles": 1038, "feature_count": 176570, "summary": "The complete MaleCNS connectome \u2014 ~176,570 neurons spanning the entire adult MALE Drosophila central nervous system (brain + optic lobes + VNC) in one specimen.", "license": "CC BY 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "drosophila", "male-cns", "whole-cns" ], "featured": true, "organism": "Drosophila melanogaster", "sex": "Male", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/malecns.html", "citation": "Berg S, Beckett IR, Costa M, Schlegel P, Januszewski M, Marin EC, Nern A, Preibisch S, Qiu W, Takemura S, et al. Sexual dimorphism in the complete connectome of the Drosophila male central nervous system. bioRxiv (2025) doi:10.1101/2025.10.09.680999. Janelia FlyEM MaleCNS v0.9, CC BY 4.0." }, { "id": "manc-full", "label": "MANC \u2014 Drosophila ventral nerve cord connectome (~23k neurons)", "kind": "3d", "tilejson": "datasets/manc-full/tilejson.json", "features": "tiles/manc-full/features.parquet/", "tiles": 1427, "feature_count": 23546, "summary": "The complete identified Male Adult Nerve Cord connectome \u2014 all ~23,500 traced, typed neurons of the adult Drosophila ventral nerve cord, in one scene.", "license": "CC BY 4.0", "tags": [ "connectome", "neurons", "em", "3d-tiles", "vnc", "drosophila", "complete-connectome" ], "featured": false, "organism": "Drosophila melanogaster", "sex": "Male", "technique": "EM connectomics", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/manc-full.html", "citation": "Takemura S, et al. A Connectome of the Male Drosophila Ventral Nerve Cord. eLife (2024); Marin EC, et al. Systematic annotation of a complete adult male Drosophila nerve cord connectome. eLife (2024). MANC v1.2.1, CC BY 4.0." }, { "id": "merscope-mouse-brain-25d", "label": "Vizgen MERSCOPE \u2014 Mouse Brain (2.5D, DAPI+polyT \u00d7 7z)", "kind": "2d", "tilejson": "datasets/merscope-mouse-brain-25d/tilejson.json", "features": "tiles2d/merscope-mouse-brain-25d/features.parquet/", "tiles": 2050625, "feature_count": 77955, "size_bytes": 41992701539, "summary": "2.5D multichannel MERSCOPE/MERFISH: DAPI (nuclear) + polyT (total-RNA) mosaics across 7 focal planes (z0-z6) with per-z cell segmentation \u2014 browsable with a Z-slider and channel selector.", "license": "Vizgen Data Release Program (open-access)", "tags": [ "spatial-transcriptomics", "merscope", "merfish", "vizgen", "in-situ", "single-cell", "2.5d", "multichannel", "z-stack" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "MERSCOPE/MERFISH", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/merscope-mouse-brain-25d.html", "citation": "Vizgen. MERFISH Mouse Brain Receptor Map \u2014 Slice1/Replicate1 (Vizgen Data Release)." }, { "id": "merscope-mouse-brain", "label": "MERSCOPE \u2014 Mouse Brain (receptor map)", "kind": "2d", "tilejson": "datasets/merscope-mouse-brain/tilejson.json", "features": "tiles2d/merscope-mouse-brain/features.parquet/", "tiles": 181212, "feature_count": 77955, "size_bytes": 4482553095, "summary": "In-situ spatial transcriptomics of a mouse brain receptor map by Vizgen MERSCOPE/MERFISH, with cells segmented over a DAPI nuclear-stain mosaic.", "license": "Vizgen Data Release Program (open-access)", "tags": [ "spatial-transcriptomics", "merscope", "merfish", "vizgen", "in-situ", "single-cell" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "MERSCOPE/MERFISH", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/merscope-mouse-brain.html", "citation": "Vizgen. MERFISH Mouse Brain Receptor Map \u2014 Slice1/Replicate1 (Vizgen Data Release)." }, { "id": "mibi-uterus", "label": "MIBI \u2014 Human Uterus", "kind": "2d", "tilejson": "datasets/mibi-uterus/tilejson.json", "features": "tiles2d/mibi-uterus/features.parquet/", "tiles": 199, "feature_count": 2235, "size_bytes": 5123976, "summary": "Single-cell multiplexed protein imaging of human uterus by MIBI mass-spectrometry imaging, with each segmented cell carrying a per-cell marker intensity matrix.", "license": "CC BY 4.0", "tags": [ "proteomics", "multiplexed-imaging", "mibi", "single-cell", "hubmap" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "MIBI", "prep": "FFPE", "condition": "n/a", "tissue": "Uterus", "html": "datasets/mibi-uterus.html", "citation": "HuBMAP Consortium. MIBI human uterus (889edfc0ac0405208792233e0cd1b392)." }, { "id": "visium-ffpe-breast", "label": "Visium \u2014 Human Breast Invasive Ductal Carcinoma (IDC, FFPE)", "kind": "2d", "tilejson": "datasets/visium-ffpe-breast/tilejson.json", "features": "tiles2d/visium-ffpe-breast/features.parquet/", "tiles": 164, "feature_count": 2518, "size_bytes": 24568133, "summary": "Spot-level spatial gene expression of human breast cancer (FFPE) by 10x Genomics Visium, with capture spots overlaid on an aligned H&E histology image.", "license": "CC BY 4.0", "tags": [ "spatial-transcriptomics", "visium", "10x-genomics", "h-and-e", "spot-array" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Visium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/visium-ffpe-breast.html", "citation": "10x Genomics. Visium Human Breast Cancer (FFPE) (Space Ranger)." }, { "id": "visium-hd-mouse-brain", "label": "Visium HD \u2014 Mouse Brain", "kind": "2d", "tilejson": "datasets/visium-hd-mouse-brain/tilejson.json", "features": "tiles2d/visium-hd-mouse-brain/features.parquet/", "tiles": 1190, "feature_count": 393543, "size_bytes": 598479338, "summary": "High-definition spatial gene expression of mouse brain by 10x Genomics Visium HD, with 8 \u00b5m bins overlaid on an aligned H&E histology image.", "license": "CC BY 4.0", "tags": [ "spatial-transcriptomics", "visium-hd", "10x-genomics", "h-and-e", "square-bins" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Visium", "prep": "FFPE", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/visium-hd-mouse-brain.html", "citation": "10x Genomics. Visium HD Mouse Brain (Space Ranger)." }, { "id": "xenium-bone-femur-nondiseased", "label": "Xenium \u2014 Human Bone Femur (non-diseased, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-bone-femur-nondiseased/tilejson.json", "features": "tiles2d/xenium-bone-femur-nondiseased/features.parquet/", "tiles": 160164, "feature_count": 34065, "size_bytes": 1501372507, "summary": "Non-diseased human femur bone section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "bone", "femur", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Bone (femur)", "html": "datasets/xenium-bone-femur-nondiseased.html", "citation": "10x Genomics. Human Bone and Bone Marrow Data with Custom Add-on Panel (Xenium). Public dataset." }, { "id": "xenium-bone-marrow-all", "label": "Xenium \u2014 Human Bone Marrow (ALL, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-bone-marrow-all/tilejson.json", "features": "tiles2d/xenium-bone-marrow-all/features.parquet/", "tiles": 59845, "feature_count": 227670, "size_bytes": 1737797537, "summary": "Human bone marrow section from acute lymphoid leukemia profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "bone-marrow", "leukemia", "acute-lymphoid-leukemia", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Bone marrow", "html": "datasets/xenium-bone-marrow-all.html", "citation": "10x Genomics. Human Bone and Bone Marrow Data with Custom Add-on Panel (Xenium). Public dataset." }, { "id": "xenium-bone-marrow-nondiseased", "label": "Xenium \u2014 Human Bone Marrow (non-diseased, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-bone-marrow-nondiseased/tilejson.json", "features": "tiles2d/xenium-bone-marrow-nondiseased/features.parquet/", "tiles": 53416, "feature_count": 85177, "size_bytes": 728026730, "summary": "Non-diseased human bone marrow section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "bone-marrow", "non-diseased", "ffpe", "multi-tissue-cancer", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Bone marrow", "html": "datasets/xenium-bone-marrow-nondiseased.html", "citation": "10x Genomics. Human Bone and Bone Marrow Data with Custom Add-on Panel (Xenium). Public dataset." }, { "id": "xenium-brain-alzheimers", "label": "Xenium \u2014 Human Brain (Alzheimer's disease, FFPE, custom add-on, preview)", "kind": "2d", "tilejson": "datasets/xenium-brain-alzheimers/tilejson.json", "features": "tiles2d/xenium-brain-alzheimers/features.parquet/", "tiles": 111490, "feature_count": 45306, "size_bytes": 1920154772, "summary": "FFPE human brain section from Alzheimer's disease profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "brain", "alzheimers", "neurodegeneration", "ffpe", "brain-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Other disease", "tissue": "Brain / CNS", "html": "datasets/xenium-brain-alzheimers.html", "citation": "10x Genomics. Xenium Human Brain Preview Data (Xenium). Public dataset." }, { "id": "xenium-brain-gbm", "label": "Xenium \u2014 Human Brain Glioblastoma (GBM, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-brain-gbm/tilejson.json", "features": "tiles2d/xenium-brain-gbm/features.parquet/", "tiles": 247980, "feature_count": 832701, "size_bytes": 17299250901, "summary": "FFPE human brain glioblastoma section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "brain", "glioblastoma", "ffpe", "brain-panel", "immuno-oncology", "transcriptomics" ], "featured": true, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Brain / CNS", "html": "datasets/xenium-brain-gbm.html", "citation": "10x Genomics. FFPE Human Brain Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on (Xenium In Situ). Public dataset." }, { "id": "xenium-brain-glioblastoma-preview", "label": "Xenium \u2014 Human Brain Glioblastoma (GBM, FFPE, custom add-on, preview)", "kind": "2d", "tilejson": "datasets/xenium-brain-glioblastoma-preview/tilejson.json", "features": "tiles2d/xenium-brain-glioblastoma-preview/features.parquet/", "tiles": 87504, "feature_count": 41207, "size_bytes": 1865190339, "summary": "Preview FFPE human brain glioblastoma section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "brain", "glioblastoma", "ffpe", "brain-panel", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Brain / CNS", "html": "datasets/xenium-brain-glioblastoma-preview.html", "citation": "10x Genomics. Xenium Human Brain Preview Data (Xenium). Public dataset." }, { "id": "xenium-brain-healthy", "label": "Xenium \u2014 Human Brain (non-diseased, FFPE, custom add-on, preview)", "kind": "2d", "tilejson": "datasets/xenium-brain-healthy/tilejson.json", "features": "tiles2d/xenium-brain-healthy/features.parquet/", "tiles": 85130, "feature_count": 24596, "size_bytes": 1102601483, "summary": "Preview FFPE healthy human brain section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "brain", "healthy", "ffpe", "brain-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Brain / CNS", "html": "datasets/xenium-brain-healthy.html", "citation": "10x Genomics. Xenium Human Brain Preview Data (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s1-bot", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 1 bottom)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s1-bot/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s1-bot/features.parquet/", "tiles": 204321, "feature_count": 259489, "size_bytes": 11703540403, "summary": "FFPE human breast cancer section (block 1, bottom) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s1-bot.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s1-mid", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 1 mid)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s1-mid/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s1-mid/features.parquet/", "tiles": 176229, "feature_count": 382897, "size_bytes": 15075664600, "summary": "FFPE human breast cancer tissue section (series S1, middle) profiled by 10x Genomics Xenium with a custom breast-biomarker and housekeeping-gene panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s1-mid.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s1-top", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 1 top)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s1-top/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s1-top/features.parquet/", "tiles": 137294, "feature_count": 213581, "size_bytes": 6138340901, "summary": "FFPE human breast cancer serial section (block 1, top) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s1-top.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s2-bot", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 2 bottom)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s2-bot/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s2-bot/features.parquet/", "tiles": 230121, "feature_count": 365545, "size_bytes": 9825170899, "summary": "FFPE human breast cancer serial section (block 2, bottom) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s2-bot.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s2-mid", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 2 mid)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s2-mid/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s2-mid/features.parquet/", "tiles": 159945, "feature_count": 388137, "size_bytes": 7667784160, "summary": "FFPE human breast cancer serial section (block 2, middle) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s2-mid.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s2-top", "label": "Xenium \u2014 Human Breast (non-diseased, FFPE, custom biomarker panel, section 2 top)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s2-top/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s2-top/features.parquet/", "tiles": 169872, "feature_count": 307758, "size_bytes": 5291919242, "summary": "FFPE human breast section (block S2 top, histologically normal control) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "ffpe", "breast-panel", "biomarkers", "xenium", "transcriptomics", "non-diseased" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s2-top.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s3-bot", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 3 bottom)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s3-bot/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s3-bot/features.parquet/", "tiles": 75927, "feature_count": 153096, "size_bytes": 4173984755, "summary": "FFPE human breast tissue section (S3 bottom) profiled on the 10x Xenium In Situ platform with a custom breast cancer biomarker gene panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s3-bot.html", "citation": "10x Genomics. Xenium FFPE Human Breast with Biomarkers Custom Add-on Panel, Section 3 Bottom (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s3-mid", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 3 mid)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s3-mid/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s3-mid/features.parquet/", "tiles": 190095, "feature_count": 380434, "size_bytes": 16373054923, "summary": "FFPE human breast tissue section (S3 mid) profiled on the 10x Xenium In Situ platform with the Human Breast Panel plus a custom biomarker add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s3-mid.html", "citation": "10x Genomics. Xenium FFPE Human Breast with Biomarkers Custom Add-on Panel, Section 3 Mid (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s3-top", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 3 top)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s3-top/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s3-top/features.parquet/", "tiles": 229113, "feature_count": 314466, "size_bytes": 6894110633, "summary": "FFPE human breast cancer section (S3 Top) profiled by 10x Genomics Xenium with a custom breast-biomarker panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "breast-cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s3-top.html", "citation": "10x Genomics. Xenium v1 Human Breast FFPE with Biomarkers & Housekeeping Genes Custom Panel (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s4-bot", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 4 bottom)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s4-bot/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s4-bot/features.parquet/", "tiles": 124551, "feature_count": 205884, "size_bytes": 7814675276, "summary": "FFPE human breast tissue section (S4 bottom) profiled on the 10x Xenium In Situ platform with the Human Breast Panel plus a custom biomarker add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s4-bot.html", "citation": "10x Genomics. Xenium FFPE Human Breast with Biomarkers Custom Add-on Panel, Section 4 Bottom (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s4-mid", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 4 mid)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s4-mid/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s4-mid/features.parquet/", "tiles": 155435, "feature_count": 342271, "size_bytes": 11267424482, "summary": "FFPE human breast tissue section (S4 mid) profiled on the 10x Xenium In Situ platform with the Human Breast Panel plus a custom biomarker add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s4-mid.html", "citation": "10x Genomics. Xenium FFPE Human Breast with Biomarkers Custom Add-on Panel, Section 4 Mid (Xenium). Public dataset." }, { "id": "xenium-breast-biomarkers-s4-top", "label": "Xenium \u2014 Human Breast Cancer (FFPE, custom biomarker panel, section 4 top)", "kind": "2d", "tilejson": "datasets/xenium-breast-biomarkers-s4-top/tilejson.json", "features": "tiles2d/xenium-breast-biomarkers-s4-top/features.parquet/", "tiles": 153141, "feature_count": 196670, "size_bytes": 6193911459, "summary": "FFPE human breast tissue section (S4 top) profiled on the 10x Xenium In Situ platform with the Human Breast Panel plus a custom biomarker add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-biomarkers-s4-top.html", "citation": "10x Genomics. Xenium FFPE Human Breast with Biomarkers Custom Add-on Panel, Section 4 Top (Xenium). Public dataset." }, { "id": "xenium-breast-cancer-prime5k", "label": "Xenium Prime 5K \u2014 Human Breast Cancer (FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-breast-cancer-prime5k/tilejson.json", "features": "tiles2d/xenium-breast-cancer-prime5k/features.parquet/", "tiles": 327719, "feature_count": 712682, "size_bytes": 13480869188, "summary": "FFPE human breast cancer profiled at ~5000 genes with the Xenium Prime 5K Human Pan Tissue & Pathways Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "cancer", "ffpe", "prime-5k", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-cancer-prime5k.html", "citation": "10x Genomics. FFPE Human Breast Cancer with 5K Human Pan Tissue and Pathways Panel plus 100 Custom Genes (Xenium). Public dataset." }, { "id": "xenium-breast-full", "label": "Xenium \u2014 Human Breast Invasive Ductal Carcinoma (IDC, FFPE, full slide)", "kind": "2d", "tilejson": "datasets/xenium-breast-full/tilejson.json", "features": "tiles2d/xenium-breast-full/features.parquet/", "tiles": 94699, "feature_count": 169088, "size_bytes": 4303244054, "summary": "10x Xenium spatial transcriptomics of FFPE human breast cancer (Janesick et al. 2023) \u2014 full whole-slide section.", "license": "CC BY 4.0", "tags": [ "transcriptomics", "ffpe", "breast", "cancer", "full-slide" ], "featured": true, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-full.html", "citation": "Janesick A, et al. High-resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis. Nat. Commun. 14, 8353 (2023). 10x Genomics Xenium; GEO GSE243275." }, { "id": "xenium-breast-idc-addon-reprocessed", "label": "Xenium \u2014 Human Breast Invasive Ductal Carcinoma (IDC, FFPE, custom add-on, reprocessed)", "kind": "2d", "tilejson": "datasets/xenium-breast-idc-addon-reprocessed/tilejson.json", "features": "tiles2d/xenium-breast-idc-addon-reprocessed/features.parquet/", "tiles": 226207, "feature_count": 581478, "size_bytes": 10618978098, "summary": "FFPE human breast invasive ductal carcinoma with custom add-on, re-analyzed with Xenium Onboard Analysis 1.3.0.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "invasive-ductal-carcinoma", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-idc-addon-reprocessed.html", "citation": "10x Genomics. FFPE Human Breast with Custom Add-on Panel, Invasive Ductal Carcinoma, XOA 1.3.0 (Xenium). Public dataset." }, { "id": "xenium-breast-idc-addon", "label": "Xenium \u2014 Human Breast Invasive Ductal Carcinoma (IDC, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-breast-idc-addon/tilejson.json", "features": "tiles2d/xenium-breast-idc-addon/features.parquet/", "tiles": 226192, "feature_count": 579015, "size_bytes": 10481016102, "summary": "FFPE human breast invasive ductal carcinoma profiled with the 280-gene Breast Panel plus a custom add-on on Xenium In Situ.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "invasive-ductal-carcinoma", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-idc-addon.html", "citation": "10x Genomics. FFPE Human Breast with Custom Add-on Panel, Invasive Ductal Carcinoma (Xenium). Public dataset." }, { "id": "xenium-breast-idc", "label": "Xenium \u2014 Human Breast Invasive Ductal Carcinoma (IDC, FFPE)", "kind": "2d", "tilejson": "datasets/xenium-breast-idc/tilejson.json", "features": "tiles2d/xenium-breast-idc/features.parquet/", "tiles": 216319, "feature_count": 579345, "size_bytes": 9310486225, "summary": "FFPE human breast invasive ductal carcinoma section profiled with the 280-gene Xenium Human Breast Panel on Xenium In Situ.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "invasive-ductal-carcinoma", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-idc.html", "citation": "10x Genomics. FFPE Human Breast with Pre-designed Panel, Invasive Ductal Carcinoma (Xenium). Public dataset." }, { "id": "xenium-breast-ilc-addon", "label": "Xenium \u2014 Human Breast Invasive Lobular Carcinoma (ILC, FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-breast-ilc-addon/tilejson.json", "features": "tiles2d/xenium-breast-ilc-addon/features.parquet/", "tiles": 165576, "feature_count": 368458, "size_bytes": 6080997636, "summary": "FFPE human breast invasive lobular carcinoma profiled with the 280-gene Breast Panel plus a custom add-on on Xenium In Situ.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "invasive-lobular-carcinoma", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-ilc-addon.html", "citation": "10x Genomics. FFPE Human Breast with Custom Add-on Panel, Invasive Lobular Carcinoma (Xenium). Public dataset." }, { "id": "xenium-breast-ilc", "label": "Xenium \u2014 Human Breast Invasive Lobular Carcinoma (ILC, FFPE)", "kind": "2d", "tilejson": "datasets/xenium-breast-ilc/tilejson.json", "features": "tiles2d/xenium-breast-ilc/features.parquet/", "tiles": 170072, "feature_count": 359532, "size_bytes": 5399525317, "summary": "FFPE human breast invasive lobular carcinoma section profiled with the 280-gene Xenium Human Breast Panel on Xenium In Situ.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "breast", "invasive-lobular-carcinoma", "ffpe", "breast-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Breast", "html": "datasets/xenium-breast-ilc.html", "citation": "10x Genomics. FFPE Human Breast with Pre-designed Panel, Invasive Lobular Carcinoma (Xenium). Public dataset." }, { "id": "xenium-cervical-cancer-prime5k", "label": "Xenium Prime 5K \u2014 Human Cervical Cancer (FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-cervical-cancer-prime5k/tilejson.json", "features": "tiles2d/xenium-cervical-cancer-prime5k/features.parquet/", "tiles": 243418, "feature_count": 856895, "size_bytes": 14176645335, "summary": "FFPE human cervical cancer profiled at ~5000 genes with the Xenium Prime 5K Human Pan Tissue & Pathways Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "cervix", "cervical-cancer", "ffpe", "prime-5k", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Cervix", "html": "datasets/xenium-cervical-cancer-prime5k.html", "citation": "10x Genomics. FFPE Human Cervical Cancer with 5K Human Pan Tissue and Pathways Panel plus 100 Custom Genes (Xenium). Public dataset." }, { "id": "xenium-colon-cancer-addon", "label": "Xenium \u2014 Human Colon Cancer (FFPE, Colon panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-colon-cancer-addon/tilejson.json", "features": "tiles2d/xenium-colon-cancer-addon/features.parquet/", "tiles": 140023, "feature_count": 591703, "size_bytes": 8479328061, "summary": "FFPE human colon adenocarcinoma section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Colon panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "colon", "cancer", "ffpe", "colon-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Colon / large intestine", "html": "datasets/xenium-colon-cancer-addon.html", "citation": "10x Genomics. Human Colon Preview Data \u2014 Cancer, add-on panel (Xenium). Public dataset." }, { "id": "xenium-colon-cancer", "label": "Xenium \u2014 Human Colon Cancer (FFPE, Colon panel)", "kind": "2d", "tilejson": "datasets/xenium-colon-cancer/tilejson.json", "features": "tiles2d/xenium-colon-cancer/features.parquet/", "tiles": 134710, "feature_count": 652587, "size_bytes": 7631280639, "summary": "FFPE human colon adenocarcinoma section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the base Human Colon panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "colon", "cancer", "ffpe", "colon-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Colon / large intestine", "html": "datasets/xenium-colon-cancer.html", "citation": "10x Genomics. Human Colon Preview Data \u2014 Cancer, base panel (Xenium). Public dataset." }, { "id": "xenium-colon-nondiseased-addon", "label": "Xenium \u2014 Human Colon (non-diseased, FFPE, Colon panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-colon-nondiseased-addon/tilejson.json", "features": "tiles2d/xenium-colon-nondiseased-addon/features.parquet/", "tiles": 124027, "feature_count": 277974, "size_bytes": 4519030935, "summary": "FFPE non-diseased human colon section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Colon panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "colon", "non-diseased", "ffpe", "colon-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Colon / large intestine", "html": "datasets/xenium-colon-nondiseased-addon.html", "citation": "10x Genomics. Human Colon Preview Data \u2014 Non-diseased, add-on panel (Xenium). Public dataset." }, { "id": "xenium-colon-nondiseased", "label": "Xenium \u2014 Human Colon (non-diseased, FFPE, Colon panel)", "kind": "2d", "tilejson": "datasets/xenium-colon-nondiseased/tilejson.json", "features": "tiles2d/xenium-colon-nondiseased/features.parquet/", "tiles": 118504, "feature_count": 273109, "size_bytes": 3703667015, "summary": "FFPE non-diseased human colon section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the base Human Colon panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "colon", "non-diseased", "ffpe", "colon-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Colon / large intestine", "html": "datasets/xenium-colon-nondiseased.html", "citation": "10x Genomics. Human Colon Preview Data \u2014 Non-diseased, base panel (Xenium). Public dataset." }, { "id": "xenium-colorectal-cancer-io", "label": "Xenium \u2014 Human Colorectal Cancer (FFPE, immuno-oncology panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-colorectal-cancer-io/tilejson.json", "features": "tiles2d/xenium-colorectal-cancer-io/features.parquet/", "tiles": 95852, "feature_count": 395802, "size_bytes": 5984483002, "summary": "FFPE human colorectal cancer section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Immuno-Oncology Profiling Panel and a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "colorectum", "colorectal-cancer", "ffpe", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Colon / large intestine", "html": "datasets/xenium-colorectal-cancer-io.html", "citation": "10x Genomics. FFPE Human Colorectal Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on (Xenium). Public dataset." }, { "id": "xenium-heart-nondiseased", "label": "Xenium \u2014 Human Heart (non-diseased, FFPE, Multi-Tissue & Cancer panel)", "kind": "2d", "tilejson": "datasets/xenium-heart-nondiseased/tilejson.json", "features": "tiles2d/xenium-heart-nondiseased/features.parquet/", "tiles": 48613, "feature_count": 26571, "size_bytes": 615102815, "summary": "FFPE non-diseased human heart section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Multi-Tissue & Cancer panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "heart", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Heart", "html": "datasets/xenium-heart-nondiseased.html", "citation": "10x Genomics. Human Heart Data with Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-kidney-cancer", "label": "Xenium \u2014 Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel, preview)", "kind": "2d", "tilejson": "datasets/xenium-kidney-cancer/tilejson.json", "features": "tiles2d/xenium-kidney-cancer/features.parquet/", "tiles": 37470, "feature_count": 56951, "size_bytes": 828337312, "summary": "FFPE human kidney cancer section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Multi-Tissue & Cancer panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "kidney", "cancer", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Kidney", "html": "datasets/xenium-kidney-cancer.html", "citation": "10x Genomics. Human Kidney Preview Data with Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-kidney-nondiseased", "label": "Xenium \u2014 Human Kidney (non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)", "kind": "2d", "tilejson": "datasets/xenium-kidney-nondiseased/tilejson.json", "features": "tiles2d/xenium-kidney-nondiseased/features.parquet/", "tiles": 54651, "feature_count": 98320, "size_bytes": 1272948686, "summary": "Non-diseased human kidney FFPE section profiled by Xenium In Situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "kidney", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Kidney", "html": "datasets/xenium-kidney-nondiseased.html", "citation": "10x Genomics. Human Kidney Preview Data (Xenium Human Multi-Tissue and Cancer Panel). Public dataset." }, { "id": "xenium-kidney", "label": "Xenium Protein \u2014 Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel)", "kind": "2d", "tilejson": "datasets/xenium-kidney/tilejson.json", "features": "tiles2d/xenium-kidney/features.parquet/", "tiles": 150182, "feature_count": 474686, "size_bytes": 8451808605, "summary": "10x Xenium In Situ (transcriptomics + protein) of FFPE human kidney (renal cell carcinoma).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "ffpe", "protein", "renal" ], "featured": true, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium Protein", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Kidney", "html": "datasets/xenium-kidney.html", "citation": "10x Genomics, 2024. Xenium Human Kidney (FFPE, Protein)." }, { "id": "xenium-liver-cancer", "label": "Xenium \u2014 Human Liver Cancer (FFPE, Multi-Tissue & Cancer panel)", "kind": "2d", "tilejson": "datasets/xenium-liver-cancer/tilejson.json", "features": "tiles2d/xenium-liver-cancer/features.parquet/", "tiles": 80329, "feature_count": 163900, "size_bytes": 3114167689, "summary": "Human liver cancer FFPE section profiled by Xenium In Situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel plus a 97-gene custom add-on (474 genes).", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "liver", "cancer", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Liver", "html": "datasets/xenium-liver-cancer.html", "citation": "10x Genomics. Human Liver Data with Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-liver-nondiseased", "label": "Xenium \u2014 Human Liver (non-diseased, FFPE, Multi-Tissue & Cancer panel)", "kind": "2d", "tilejson": "datasets/xenium-liver-nondiseased/tilejson.json", "features": "tiles2d/xenium-liver-nondiseased/features.parquet/", "tiles": 165644, "feature_count": 241144, "size_bytes": 3655505957, "summary": "Non-diseased human liver FFPE section profiled by Xenium In Situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "liver", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Liver", "html": "datasets/xenium-liver-nondiseased.html", "citation": "10x Genomics. Human Liver Data with Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-lung-cancer-addon-preview", "label": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel, custom add-on, preview)", "kind": "2d", "tilejson": "datasets/xenium-lung-cancer-addon-preview/tilejson.json", "features": "tiles2d/xenium-lung-cancer-addon-preview/features.parquet/", "tiles": 271075, "feature_count": 535324, "size_bytes": 10019548298, "summary": "Human lung cancer FFPE section profiled by Xenium In Situ spatial transcriptomics with the Human Lung Panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "cancer", "ffpe", "lung-panel", "preview", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-cancer-addon-preview.html", "citation": "10x Genomics. Xenium Human Lung Preview Data (Human Lung Panel + custom add-on). Public dataset." }, { "id": "xenium-lung-cancer-io-addon", "label": "Xenium \u2014 Human Lung Cancer (FFPE, immuno-oncology panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-lung-cancer-io-addon/tilejson.json", "features": "tiles2d/xenium-lung-cancer-io-addon/features.parquet/", "tiles": 98768, "feature_count": 164124, "size_bytes": 4219650907, "summary": "Human lung cancer FFPE section profiled by Xenium In Situ spatial transcriptomics with the Human Immuno-Oncology Profiling Panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "cancer", "ffpe", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-cancer-io-addon.html", "citation": "10x Genomics. FFPE Human Lung Cancer Data with Human Immuno-Oncology Profiling Panel and Custom Add-on (Xenium). Public dataset." }, { "id": "xenium-lung-cancer-multimodal", "label": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel, custom add-on, multimodal segmentation, preview)", "kind": "2d", "tilejson": "datasets/xenium-lung-cancer-multimodal/tilejson.json", "features": "tiles2d/xenium-lung-cancer-multimodal/features.parquet/", "tiles": 71853, "feature_count": 165465, "size_bytes": 2003344625, "summary": "Human lung cancer FFPE section profiled by Xenium In Situ spatial transcriptomics with the Human Lung Panel plus a custom lung-cell add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "cancer", "ffpe", "lung-panel", "preview", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-cancer-multimodal.html", "citation": "10x Genomics. Xenium Human Lung Preview Data (Xenium In Situ, Human Lung Panel + custom add-on). Public dataset." }, { "id": "xenium-lung-cancer-prime5k", "label": "Xenium Prime 5K \u2014 Human Lung Cancer (FFPE)", "kind": "2d", "tilejson": "datasets/xenium-lung-cancer-prime5k/tilejson.json", "features": "tiles2d/xenium-lung-cancer-prime5k/features.parquet/", "tiles": 160408, "feature_count": 283728, "size_bytes": 15890731746, "summary": "FFPE human lung cancer profiled by Xenium Prime 5K in-situ spatial transcriptomics (~5000-gene high-plex panel).", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "cancer", "ffpe", "prime-5k", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-cancer-prime5k.html", "citation": "10x Genomics. FFPE Human Lung Cancer with Xenium Prime 5K Human Pan Tissue and Pathways Panel (Xenium). Public dataset." }, { "id": "xenium-lung-cancer-v1", "label": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel)", "kind": "2d", "tilejson": "datasets/xenium-lung-cancer-v1/tilejson.json", "features": "tiles2d/xenium-lung-cancer-v1/features.parquet/", "tiles": 160925, "feature_count": 284090, "size_bytes": 4359537738, "summary": "Human lung adenocarcinoma FFPE section profiled by Xenium In Situ spatial transcriptomics with the Human Lung Gene Expression Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "cancer", "ffpe", "lung-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-cancer-v1.html", "citation": "10x Genomics. Human Lung Cancer FFPE (Xenium Human Lung Gene Expression Panel). Public dataset." }, { "id": "xenium-lung-full", "label": "Xenium \u2014 Human Lung Cancer (FFPE, Multi-Tissue & Cancer panel, full slide, preview)", "kind": "2d", "tilejson": "datasets/xenium-lung-full/tilejson.json", "features": "tiles2d/xenium-lung-full/features.parquet/", "tiles": 72539, "feature_count": 151535, "size_bytes": 3215029352, "summary": "10x Xenium spatial transcriptomics of FFPE human lung cancer \u2014 full whole-slide section (10x Genomics preview release).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "ffpe", "lung", "cancer", "full-slide" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Lung", "html": "datasets/xenium-lung-full.html", "citation": "10x Genomics, 2024. Xenium Human Lung Cancer (FFPE), Human Multi-Tissue & Cancer Panel, XOA v1.5.0." }, { "id": "xenium-lung-nondiseased-addon-preview", "label": "Xenium \u2014 Human Lung (non-diseased, FFPE, Lung panel, custom add-on, preview)", "kind": "2d", "tilejson": "datasets/xenium-lung-nondiseased-addon-preview/tilejson.json", "features": "tiles2d/xenium-lung-nondiseased-addon-preview/features.parquet/", "tiles": 229691, "feature_count": 298190, "size_bytes": 4283941419, "summary": "Non-diseased human lung FFPE section profiled by Xenium In Situ spatial transcriptomics with the Human Lung Panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lung", "non-diseased", "ffpe", "lung-panel", "preview", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Lung", "html": "datasets/xenium-lung-nondiseased-addon-preview.html", "citation": "10x Genomics. Xenium Human Lung Preview Data (Xenium). Public dataset." }, { "id": "xenium-lymph-node-nondiseased", "label": "Xenium \u2014 Human Lymph Node (non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)", "kind": "2d", "tilejson": "datasets/xenium-lymph-node-nondiseased/tilejson.json", "features": "tiles2d/xenium-lymph-node-nondiseased/features.parquet/", "tiles": 51903, "feature_count": 380935, "size_bytes": 3173075622, "summary": "Non-diseased human lymph node profiled by Xenium in-situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lymph-node", "non-diseased", "ffpe", "multi-tissue-cancer", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Lymph node", "html": "datasets/xenium-lymph-node-nondiseased.html", "citation": "10x Genomics. Human Lymph Node Preview Data (Xenium Human Multi-Tissue and Cancer Panel) (Xenium). Public dataset." }, { "id": "xenium-lymph-node-reactive-prime5k", "label": "Xenium Prime 5K \u2014 Human Lymph Node (reactive follicular hyperplasia, FFPE, preview)", "kind": "2d", "tilejson": "datasets/xenium-lymph-node-reactive-prime5k/tilejson.json", "features": "tiles2d/xenium-lymph-node-reactive-prime5k/features.parquet/", "tiles": 108537, "feature_count": 722836, "size_bytes": 22197508437, "summary": "FFPE reactive human lymph node profiled by Xenium Prime 5K in-situ spatial transcriptomics (~5000-gene high-plex panel).", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "lymph-node", "reactive-hyperplasia", "ffpe", "prime-5k", "immunology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Other disease", "tissue": "Lymph node", "html": "datasets/xenium-lymph-node-reactive-prime5k.html", "citation": "10x Genomics. Preview Data: FFPE Human Lymph Node with 5K Pan Tissue and Pathways Panel (Xenium). Public dataset." }, { "id": "xenium-mouse-ad-tgcrnd8-17-9mo", "label": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 17.9 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-tgcrnd8-17-9mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-tgcrnd8-17-9mo/features.parquet/", "tiles": 77140, "feature_count": 62754, "size_bytes": 1766506658, "summary": "TgCRND8 Alzheimer's amyloidosis mouse brain at 17.9 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "alzheimers", "ffpe", "neuroscience", "transcriptomics" ], "featured": true, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Other disease", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-tgcrnd8-17-9mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course. Public dataset." }, { "id": "xenium-mouse-ad-tgcrnd8-2-5mo", "label": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 2.5 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-tgcrnd8-2-5mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-tgcrnd8-2-5mo/features.parquet/", "tiles": 59596, "feature_count": 54335, "size_bytes": 1711393944, "summary": "TgCRND8 Alzheimer's amyloidosis mouse brain at 2.5 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "alzheimers", "ffpe", "neuroscience", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Other disease", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-tgcrnd8-2-5mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course (Xenium). Public dataset." }, { "id": "xenium-mouse-ad-tgcrnd8-5-7mo", "label": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 5.7 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-tgcrnd8-5-7mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-tgcrnd8-5-7mo/features.parquet/", "tiles": 58303, "feature_count": 59138, "size_bytes": 1589075401, "summary": "TgCRND8 Alzheimer's amyloidosis mouse brain at 5.7 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "alzheimers", "ffpe", "neuroscience", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Other disease", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-tgcrnd8-5-7mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course (Xenium). Public dataset." }, { "id": "xenium-mouse-ad-wt-13-4mo", "label": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 13.2 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-wt-13-4mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-wt-13-4mo/features.parquet/", "tiles": 79728, "feature_count": 60403, "size_bytes": 1781959928, "summary": "Wild-type control mouse brain at 13.2 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "wild-type-control", "ffpe", "neuroscience", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-wt-13-4mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course (Xenium). Public dataset." }, { "id": "xenium-mouse-ad-wt-2-5mo", "label": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 2.5 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-wt-2-5mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-wt-2-5mo/features.parquet/", "tiles": 60308, "feature_count": 58685, "size_bytes": 1957044407, "summary": "Wild-type control mouse brain at 2.5 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "wild-type-control", "ffpe", "neuroscience", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-wt-2-5mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course (Xenium). Public dataset." }, { "id": "xenium-mouse-ad-wt-5-7mo", "label": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 5.7 months)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ad-wt-5-7mo/tilejson.json", "features": "tiles2d/xenium-mouse-ad-wt-5-7mo/features.parquet/", "tiles": 69498, "feature_count": 59142, "size_bytes": 1857124259, "summary": "Wild-type control mouse brain at 5.7 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "brain", "wild-type-control", "ffpe", "neuroscience", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-ad-wt-5-7mo.html", "citation": "10x Genomics. Xenium In Situ Analysis of Alzheimer's Disease Mouse Model Brain Coronal Sections from One Hemisphere Over a Time Course (Xenium). Public dataset." }, { "id": "xenium-mouse-brain-coronal-ctx-hp", "label": "Xenium \u2014 Mouse Brain (fresh-frozen, cortex + hippocampus, example subset)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-coronal-ctx-hp/tilejson.json", "features": "tiles2d/xenium-mouse-brain-coronal-ctx-hp/features.parquet/", "tiles": 38534, "feature_count": 36889, "size_bytes": 1193931507, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen mouse brain cortex + hippocampus crop, profiled with the 10x Genomics Mouse Brain Gene Expression Panel.", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "mouse-brain-panel", "example-subset", "neuroscience" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-coronal-ctx-hp.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain for Xenium Explorer Demo (cortex + hippocampus subset) (Xenium). Public dataset." }, { "id": "xenium-mouse-brain-coronal", "label": "Xenium \u2014 Mouse Brain (non-diseased, fresh-frozen, coronal)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-coronal/tilejson.json", "features": "tiles2d/xenium-mouse-brain-coronal/features.parquet/", "tiles": 144280, "feature_count": 131889, "size_bytes": 4394696162, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen adult mouse brain coronal section (248-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "mouse-brain-panel", "neuroscience" ], "featured": true, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "Healthy / non-diseased", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-coronal.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain for Xenium Explorer Demo (Xenium). Public dataset." }, { "id": "xenium-mouse-brain-prime5k", "label": "Xenium Prime 5K \u2014 Mouse Brain (fresh-frozen, hemisphere)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-prime5k/tilejson.json", "features": "tiles2d/xenium-mouse-brain-prime5k/features.parquet/", "tiles": 77464, "feature_count": 64408, "size_bytes": 14461880344, "summary": "10x Xenium Prime 5K spatial transcriptomics of a fresh-frozen mouse brain hemisphere (~5000-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "prime-5k", "neuroscience" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-prime5k.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain Hemisphere with 5K Mouse Pan Tissue and Pathways Panel (Xenium Prime). Public dataset." }, { "id": "xenium-mouse-brain-rep1", "label": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 1)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-rep1/tilejson.json", "features": "tiles2d/xenium-mouse-brain-rep1/features.parquet/", "tiles": 147974, "feature_count": 163296, "size_bytes": 5753866237, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen mouse brain coronal section, MultiSection replicate 1 (248-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "mouse-brain-panel", "replicate", "neuroscience" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-rep1.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain Replicates, section 1 (Xenium). Public dataset." }, { "id": "xenium-mouse-brain-rep2", "label": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 2)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-rep2/tilejson.json", "features": "tiles2d/xenium-mouse-brain-rep2/features.parquet/", "tiles": 149905, "feature_count": 155858, "size_bytes": 5468592877, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen mouse brain section, MultiSection replicate 2 (248-gene Mouse Brain panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "mouse-brain-panel", "replicate", "neuroscience" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-rep2.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain Replicates, section 2 (Xenium). Public dataset." }, { "id": "xenium-mouse-brain-rep3", "label": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 3)", "kind": "2d", "tilejson": "datasets/xenium-mouse-brain-rep3/tilejson.json", "features": "tiles2d/xenium-mouse-brain-rep3/features.parquet/", "tiles": 145155, "feature_count": 159285, "size_bytes": 5501606241, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen mouse brain coronal section, MultiSection replicate 3 (248-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "brain", "fresh-frozen", "mouse-brain-panel", "replicate", "neuroscience" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "n/a", "tissue": "Brain / CNS", "html": "datasets/xenium-mouse-brain-rep3.html", "citation": "10x Genomics. Fresh Frozen Mouse Brain Replicates, section 3 (Xenium). Public dataset." }, { "id": "xenium-mouse-colon", "label": "Xenium \u2014 Mouse Colon (non-diseased, fresh-frozen, multimodal segmentation)", "kind": "2d", "tilejson": "datasets/xenium-mouse-colon/tilejson.json", "features": "tiles2d/xenium-mouse-colon/features.parquet/", "tiles": 87280, "feature_count": 224069, "size_bytes": 7025601359, "summary": "10x Xenium spatial transcriptomics of a fresh-frozen non-diseased mouse colon (379-gene atlas panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "colon", "fresh-frozen", "mouse-tissue-atlas", "intestine" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "Healthy / non-diseased", "tissue": "Colon / large intestine", "html": "datasets/xenium-mouse-colon.html", "citation": "10x Genomics. Fresh Frozen Mouse Colon with Xenium Multimodal Cell Segmentation (Xenium). Public dataset." }, { "id": "xenium-mouse-femur-edta-pfa", "label": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, EDTA-PFA decalcification, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-mouse-femur-edta-pfa/tilejson.json", "features": "tiles2d/xenium-mouse-femur-edta-pfa/features.parquet/", "tiles": 131821, "feature_count": 249808, "size_bytes": 3725526693, "summary": "Non-diseased FFPE mouse femur decalcified in EDTA/PFA over ~3 days, profiled on the 10x Xenium In Situ platform with the Mouse Tissue Atlassing Panel plus bone add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "bone", "non-diseased", "ffpe", "multi-tissue-atlas", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Bone (femur)", "html": "datasets/xenium-mouse-femur-edta-pfa.html", "citation": "10x Genomics. Mouse Bone (Femur) Data with Custom Add-on Panel, EDTA/PFA 3-Day Decalcification (Xenium). Public dataset." }, { "id": "xenium-mouse-femur-edta", "label": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, EDTA decalcification, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-mouse-femur-edta/tilejson.json", "features": "tiles2d/xenium-mouse-femur-edta/features.parquet/", "tiles": 192311, "feature_count": 350860, "size_bytes": 5240415352, "summary": "Non-diseased FFPE mouse femur decalcified in EDTA over ~3 days, profiled on the 10x Xenium In Situ platform with the Mouse Tissue Atlassing Panel plus bone add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "bone", "non-diseased", "ffpe", "multi-tissue-atlas", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Bone (femur)", "html": "datasets/xenium-mouse-femur-edta.html", "citation": "10x Genomics. Mouse Bone (Femur) Data with Custom Add-on Panel, EDTA 3-Day Decalcification (Xenium). Public dataset." }, { "id": "xenium-mouse-femur-formic-acid", "label": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, formic-acid decalcification, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-mouse-femur-formic-acid/tilejson.json", "features": "tiles2d/xenium-mouse-femur-formic-acid/features.parquet/", "tiles": 136376, "feature_count": 255532, "size_bytes": 3608808425, "summary": "Non-diseased FFPE mouse femur decalcified in formic acid over 24 hours, profiled on the 10x Xenium In Situ platform with the Mouse Tissue Atlassing Panel plus bone add-on.", "license": "CC BY 4.0", "tags": [ "mus-musculus", "bone", "non-diseased", "ffpe", "multi-tissue-atlas", "transcriptomics" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Bone (femur)", "html": "datasets/xenium-mouse-femur-formic-acid.html", "citation": "10x Genomics. Mouse Bone (Femur) Data with Custom Add-on Panel, Formic Acid 24-Hour Decalcification (Xenium). Public dataset." }, { "id": "xenium-mouse-ileum-multicellseg", "label": "Xenium Prime 5K \u2014 Mouse Ileum (FFPE, multimodal segmentation, example subset)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ileum-multicellseg/tilejson.json", "features": "tiles2d/xenium-mouse-ileum-multicellseg/features.parquet/", "tiles": 556, "feature_count": 36, "size_bytes": 1079219, "summary": "10x Xenium Prime 5K spatial transcriptomics of a mouse ileum, multimodal-segmentation example subset (~5000-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "mouse", "ileum", "prime-5k", "example-subset", "intestine" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "n/a", "tissue": "Small intestine", "html": "datasets/xenium-mouse-ileum-multicellseg.html", "citation": "10x Genomics. Xenium Prime 5K Mouse Ileum multimodal cell segmentation example data (tiny), XOA v3.0 (Xenium Prime). Public dataset." }, { "id": "xenium-mouse-ileum", "label": "Xenium Prime 5K \u2014 Mouse Ileum (FFPE, example subset)", "kind": "2d", "tilejson": "datasets/xenium-mouse-ileum/tilejson.json", "features": "tiles2d/xenium-mouse-ileum/features.parquet/", "tiles": 555, "feature_count": 23, "size_bytes": 1063458, "summary": "10x Xenium Prime 5K spatial transcriptomics of FFPE mouse ileum (~5000-gene panel).", "license": "CC BY 4.0", "tags": [ "transcriptomics", "ffpe", "mouse", "intestine", "prime-5k", "example-subset" ], "featured": false, "organism": "Mus musculus", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "n/a", "tissue": "Small intestine", "html": "datasets/xenium-mouse-ileum.html", "citation": "10x Genomics, 2024. Xenium Prime 5K Mouse Ileum example data (FFPE), XOA v3.0." }, { "id": "xenium-ovarian-cancer-prime5k", "label": "Xenium Prime 5K \u2014 Human Ovarian Cancer (FFPE, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-ovarian-cancer-prime5k/tilejson.json", "features": "tiles2d/xenium-ovarian-cancer-prime5k/features.parquet/", "tiles": 179166, "feature_count": 414999, "size_bytes": 14597308876, "summary": "FFPE human ovarian cancer profiled by Xenium Prime 5K in-situ spatial transcriptomics (~5000-gene high-plex panel).", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "ovary", "ovarian-cancer", "ffpe", "prime-5k", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Ovary", "html": "datasets/xenium-ovarian-cancer-prime5k.html", "citation": "10x Genomics. FFPE Human Ovarian Cancer with 5K Human Pan Tissue and Pathways Panel plus 100 Custom Genes (Xenium). Public dataset." }, { "id": "xenium-ovary-cancer-ff", "label": "Xenium \u2014 Human Ovarian Cancer (fresh-frozen, Multi-Tissue & Cancer panel)", "kind": "2d", "tilejson": "datasets/xenium-ovary-cancer-ff/tilejson.json", "features": "tiles2d/xenium-ovary-cancer-ff/features.parquet/", "tiles": 107468, "feature_count": 209114, "size_bytes": 13508936476, "summary": "Fresh-frozen human ovarian cancer profiled by Xenium in-situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "ovary", "ovarian-cancer", "fresh-frozen", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "Xenium", "prep": "Fresh-frozen", "condition": "Cancer / tumor", "tissue": "Ovary", "html": "datasets/xenium-ovary-cancer-ff.html", "citation": "10x Genomics. Cross-Platform Comparison: FF Human Ovarian Cancer with Xenium v1 and Xenium Prime 5K (Xenium). Public dataset." }, { "id": "xenium-ovary-full", "label": "Xenium \u2014 Human Ovarian Cancer (FFPE, immuno-oncology panel, custom add-on, full slide)", "kind": "2d", "tilejson": "datasets/xenium-ovary-full/tilejson.json", "features": "tiles2d/xenium-ovary-full/features.parquet/", "tiles": 92742, "feature_count": 252430, "size_bytes": 3159406131, "summary": "10x Xenium spatial transcriptomics of FFPE human ovarian cancer with the Immuno-Oncology panel \u2014 full slide.", "license": "CC BY 4.0", "tags": [ "transcriptomics", "ffpe", "ovary", "cancer", "immuno-oncology", "full-slide" ], "featured": false, "organism": "Homo sapiens", "sex": "Female", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Ovary", "html": "datasets/xenium-ovary-full.html", "citation": "10x Genomics, 2024. Xenium Human Ovarian Cancer (FFPE), Human Immuno-Oncology Profiling Panel + add-on, XOA v2.0.0." }, { "id": "xenium-pancreas-cancer-addon", "label": "Xenium \u2014 Human Pancreatic Adenocarcinoma (FFPE, Multi-Tissue & Cancer panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-pancreas-cancer-addon/tilejson.json", "features": "tiles2d/xenium-pancreas-cancer-addon/features.parquet/", "tiles": 54867, "feature_count": 192452, "size_bytes": 3082972085, "summary": "FFPE human pancreatic cancer profiled by Xenium in-situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel plus a custom add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "pancreas", "cancer", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Pancreas", "html": "datasets/xenium-pancreas-cancer-addon.html", "citation": "10x Genomics. Pancreatic Cancer with Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-pancreas-multimodal", "label": "Xenium \u2014 Human Pancreas (non-diseased, FFPE, Multi-Tissue & Cancer panel, multimodal segmentation)", "kind": "2d", "tilejson": "datasets/xenium-pancreas-multimodal/tilejson.json", "features": "tiles2d/xenium-pancreas-multimodal/features.parquet/", "tiles": 46418, "feature_count": 143397, "size_bytes": 1534982861, "summary": "10x Xenium spatial transcriptomics of non-diseased FFPE human pancreas (multimodal cell segmentation), profiled with the 377-gene Human Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "pancreas", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Pancreas", "html": "datasets/xenium-pancreas-multimodal.html", "citation": "10x Genomics. Human Pancreas Preview Data, Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-pancreas-nondiseased", "label": "Xenium \u2014 Human Pancreas (non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)", "kind": "2d", "tilejson": "datasets/xenium-pancreas-nondiseased/tilejson.json", "features": "tiles2d/xenium-pancreas-nondiseased/features.parquet/", "tiles": 38157, "feature_count": 104713, "size_bytes": 1614671555, "summary": "Non-diseased human pancreas profiled by Xenium in-situ spatial transcriptomics with the 377-gene Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "pancreas", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Pancreas", "html": "datasets/xenium-pancreas-nondiseased.html", "citation": "10x Genomics. Human Pancreas Preview Data (Xenium Human Multi-Tissue and Cancer Panel) (Xenium). Public dataset." }, { "id": "xenium-pancreatic-adenocarcinoma-io", "label": "Xenium \u2014 Human Pancreatic Ductal Adenocarcinoma (PDAC, FFPE, immuno-oncology panel)", "kind": "2d", "tilejson": "datasets/xenium-pancreatic-adenocarcinoma-io/tilejson.json", "features": "tiles2d/xenium-pancreatic-adenocarcinoma-io/features.parquet/", "tiles": 108346, "feature_count": 239674, "size_bytes": 3131423252, "summary": "FFPE human pancreatic ductal adenocarcinoma section profiled by 10x Genomics Xenium in-situ spatial transcriptomics with the Human Immuno-Oncology Profiling Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "pancreas", "pancreatic-ductal-adenocarcinoma", "ffpe", "immuno-oncology", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Pancreas", "html": "datasets/xenium-pancreatic-adenocarcinoma-io.html", "citation": "10x Genomics. FFPE Human Pancreatic Ductal Adenocarcinoma Data with Human Immuno-Oncology Profiling Panel (Xenium). Public dataset." }, { "id": "xenium-prostate-prime5k", "label": "Xenium Prime 5K \u2014 Human Prostate Adenocarcinoma (FFPE, preview)", "kind": "2d", "tilejson": "datasets/xenium-prostate-prime5k/tilejson.json", "features": "tiles2d/xenium-prostate-prime5k/features.parquet/", "tiles": 109449, "feature_count": 196828, "size_bytes": 6290828291, "summary": "High-plex (~5000-gene) 10x Xenium Prime 5K spatial transcriptomics of FFPE human prostate adenocarcinoma.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "prostate", "cancer", "ffpe", "prime-5k", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Male", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Prostate", "html": "datasets/xenium-prostate-prime5k.html", "citation": "10x Genomics. Preview Data: FFPE Human Prostate Adenocarcinoma with 5K Human Pan Tissue and Pathways Panel (Xenium). Public dataset." }, { "id": "xenium-skin-melanoma-addon", "label": "Xenium \u2014 Human Skin Melanoma (FFPE, Skin panel, custom add-on)", "kind": "2d", "tilejson": "datasets/xenium-skin-melanoma-addon/tilejson.json", "features": "tiles2d/xenium-skin-melanoma-addon/features.parquet/", "tiles": 31748, "feature_count": 88182, "size_bytes": 1580425029, "summary": "10x Xenium spatial transcriptomics of FFPE human melanoma skin, profiled with the Xenium Human Skin Gene Expression Panel plus a custom gene add-on.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "skin", "melanoma", "ffpe", "skin-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Skin", "html": "datasets/xenium-skin-melanoma-addon.html", "citation": "10x Genomics. Human Skin Preview Data, Xenium Human Skin Gene Expression Panel with Custom Add-On (Xenium). Public dataset." }, { "id": "xenium-skin-melanoma-prime5k", "label": "Xenium Prime 5K \u2014 Human Skin Dermal Melanoma (FFPE, preview)", "kind": "2d", "tilejson": "datasets/xenium-skin-melanoma-prime5k/tilejson.json", "features": "tiles2d/xenium-skin-melanoma-prime5k/features.parquet/", "tiles": 55315, "feature_count": 114754, "size_bytes": 6445594013, "summary": "High-plex (~5000-gene) 10x Xenium Prime 5K spatial transcriptomics of FFPE human primary dermal melanoma.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "skin", "melanoma", "ffpe", "prime-5k", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium Prime", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Skin", "html": "datasets/xenium-skin-melanoma-prime5k.html", "citation": "10x Genomics. Preview Data: FFPE Human Skin Primary Dermal Melanoma with 5K Human Pan Tissue and Pathways Panel (Xenium). Public dataset." }, { "id": "xenium-skin-melanoma", "label": "Xenium \u2014 Human Skin Melanoma (FFPE, Skin panel)", "kind": "2d", "tilejson": "datasets/xenium-skin-melanoma/tilejson.json", "features": "tiles2d/xenium-skin-melanoma/features.parquet/", "tiles": 60155, "feature_count": 107812, "size_bytes": 2343867225, "summary": "10x Xenium spatial transcriptomics of FFPE human melanoma skin, profiled with the dedicated Xenium Human Skin Gene Expression Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "skin", "melanoma", "ffpe", "skin-panel", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Cancer / tumor", "tissue": "Skin", "html": "datasets/xenium-skin-melanoma.html", "citation": "10x Genomics. Human Skin Preview Data, Xenium Human Skin Gene Expression Panel (Xenium). Public dataset." }, { "id": "xenium-skin-nondiseased-1", "label": "Xenium \u2014 Human Skin (non-diseased, FFPE, Multi-Tissue & Cancer panel, section 1)", "kind": "2d", "tilejson": "datasets/xenium-skin-nondiseased-1/tilejson.json", "features": "tiles2d/xenium-skin-nondiseased-1/features.parquet/", "tiles": 160509, "feature_count": 69007, "size_bytes": 1529001365, "summary": "10x Xenium spatial transcriptomics of non-diseased FFPE human skin (section 1), profiled with the 377-gene Human Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "skin", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Skin", "html": "datasets/xenium-skin-nondiseased-1.html", "citation": "10x Genomics. Human Skin Data, Xenium Human Multi-Tissue and Cancer Panel (Xenium). Public dataset." }, { "id": "xenium-skin-nondiseased-2", "label": "Xenium \u2014 Human Skin (non-diseased, FFPE, Multi-Tissue & Cancer panel, section 2)", "kind": "2d", "tilejson": "datasets/xenium-skin-nondiseased-2/tilejson.json", "features": "tiles2d/xenium-skin-nondiseased-2/features.parquet/", "tiles": 91538, "feature_count": 90806, "size_bytes": 1050877553, "summary": "10x Xenium spatial transcriptomics of non-diseased FFPE human skin (section 2), profiled with the 377-gene Human Multi-Tissue & Cancer Panel.", "license": "CC BY 4.0", "tags": [ "homo-sapiens", "skin", "non-diseased", "ffpe", "multi-tissue-cancer", "transcriptomics" ], "featured": false, "organism": "Homo sapiens", "sex": "Unspecified", "technique": "Xenium", "prep": "FFPE", "condition": "Healthy / non-diseased", "tissue": "Skin", "html": "datasets/xenium-skin-nondiseased-2.html", "citation": "10x Genomics. Human Skin Data, Xenium Human Multi-Tissue and Cancer Panel (Xenium). 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(non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-kidney/tilejson.json", "type": "application/json", "title": "Xenium Protein \u2014 Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-liver-cancer/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Liver Cancer (FFPE, Multi-Tissue & Cancer panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-liver-nondiseased/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Liver (non-diseased, FFPE, Multi-Tissue & Cancer panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-cancer-addon-preview/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel, custom add-on, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-cancer-io-addon/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung Cancer (FFPE, immuno-oncology panel, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-cancer-multimodal/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel, custom add-on, multimodal segmentation, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-cancer-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Human Lung Cancer (FFPE)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-cancer-v1/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung Cancer (FFPE, Lung panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-full/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung Cancer (FFPE, Multi-Tissue & Cancer panel, full slide, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lung-nondiseased-addon-preview/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lung (non-diseased, FFPE, Lung panel, custom add-on, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lymph-node-nondiseased/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Lymph Node (non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-lymph-node-reactive-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Human Lymph Node (reactive follicular hyperplasia, FFPE, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-tgcrnd8-17-9mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 17.9 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-tgcrnd8-2-5mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 2.5 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-tgcrnd8-5-7mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 5.7 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-wt-13-4mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 13.2 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-wt-2-5mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 2.5 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ad-wt-5-7mo/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (wild-type control, FFPE, custom add-on, coronal, 5.7 months)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-coronal-ctx-hp/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (fresh-frozen, cortex + hippocampus, example subset)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-coronal/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (non-diseased, fresh-frozen, coronal)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Mouse Brain (fresh-frozen, hemisphere)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-rep1/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 1)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-rep2/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 2)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-brain-rep3/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Brain (fresh-frozen, coronal, multi-section, replicate 3)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-colon/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Colon (non-diseased, fresh-frozen, multimodal segmentation)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-femur-edta-pfa/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, EDTA-PFA decalcification, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-femur-edta/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, EDTA decalcification, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-femur-formic-acid/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Mouse Femur (non-diseased, FFPE, formic-acid decalcification, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ileum-multicellseg/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Mouse Ileum (FFPE, multimodal segmentation, example subset)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-mouse-ileum/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Mouse Ileum (FFPE, example subset)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-ovarian-cancer-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Human Ovarian Cancer (FFPE, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-ovary-cancer-ff/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Ovarian Cancer (fresh-frozen, Multi-Tissue & Cancer panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-ovary-full/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Ovarian Cancer (FFPE, immuno-oncology panel, custom add-on, full slide)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-pancreas-cancer-addon/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Pancreatic Adenocarcinoma (FFPE, Multi-Tissue & Cancer panel, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-pancreas-multimodal/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Pancreas (non-diseased, FFPE, Multi-Tissue & Cancer panel, multimodal segmentation)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-pancreas-nondiseased/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Pancreas (non-diseased, FFPE, Multi-Tissue & Cancer panel, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-pancreatic-adenocarcinoma-io/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Pancreatic Ductal Adenocarcinoma (PDAC, FFPE, immuno-oncology panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-prostate-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Human Prostate Adenocarcinoma (FFPE, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-skin-melanoma-addon/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Skin Melanoma (FFPE, Skin panel, custom add-on)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-skin-melanoma-prime5k/tilejson.json", "type": "application/json", "title": "Xenium Prime 5K \u2014 Human Skin Dermal Melanoma (FFPE, preview)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-skin-melanoma/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Skin Melanoma (FFPE, Skin panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-skin-nondiseased-1/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Skin (non-diseased, FFPE, Multi-Tissue & Cancer panel, section 1)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-skin-nondiseased-2/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Skin (non-diseased, FFPE, Multi-Tissue & Cancer panel, section 2)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-tonsil-follicular/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Tonsil (follicular hyperplasia, FFPE, Multi-Tissue & Cancer panel)" }, { "rel": "item", "href": "https://ngrf.mudm.io/datasets/xenium-tonsil-reactive/tilejson.json", "type": "application/json", "title": "Xenium \u2014 Human Tonsil (reactive follicular hyperplasia, FFPE, Multi-Tissue & Cancer panel)" } ], "mudm:facets": { "modality": [ "2d", "3d" ], "organism": [ "Drosophila melanogaster", "Homo sapiens", "Mus musculus" ], "sex": [ "Female", "Male", "Unspecified" ], "technique": [ "3D reference anatomy", "CODEX/PhenoCycler", "CosMx", "EM connectomics", "MERSCOPE/MERFISH", "MIBI", "Visium", "Xenium", "Xenium Prime", "Xenium Protein" ], "prep": [ "FFPE", "Fresh-frozen" ], "condition": [ "Cancer / tumor", "Healthy / non-diseased", "Other disease", "n/a" ], "tissue": [ "Bone (femur)", "Bone marrow", "Brain / CNS", "Breast", "Cervix", "Colon / large intestine", "Heart", "Kidney", "Liver", "Lung", "Lymph node", "Ovary", "Pancreas", "Prostate", "Skin", "Small intestine", "Spleen", "Thymus", "Tonsil", "Uterus", "Whole body" ] }, "mudm:dataset_count": 102 }