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Xenium Protein — Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel) 2D

Xenium In Situ (transcriptomics + protein) · Homo sapiens · Kidney

Xenium Protein — Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel) Open in viewer ▶

Adult human kidney (renal cell carcinoma) profiled with the 10x Genomics Xenium Human Multi-Tissue & Cancer Panel plus a protein add-on. The catalogue serves the cell and nucleus boundaries as vector polygons, the transcripts as points, and the DAPI morphology image as a raster pyramid.

Metadata

cells (tiled)474,686 polygons
nuclei468,383 polygons
transcripts77,056,936 points
genes516
resolution0.2125 µm/px
image54002×27328 px
zoom0–9
tiles150,182
size7.87 GB

Provenance & reproducibility

Source: https://www.10xgenomics.com/datasets/xenium-protein-ffpe-human-renal-carcinoma
License: CC BY 4.0
Cite: 10x Genomics, 2024. Xenium Human Kidney (FFPE, Protein).

uv run python -m mudm_tools.converters.cli convert -f xenium -i data/Xenium_V1_Human_Kidney_FFPE_Protein_updated_outs -o tiles2d/xenium-kidney
mudm 0.6.1 · mudm-tools 0.6.3
muDM: cells & nuclei → Polygon (featureClass cell/nucleus); transcripts → Point

Programmatic access

Raster tiles (PNG pyramid):

https://ngrf.mudm.io/tiles2d/xenium-kidney/raster/{z}/{x}/{y}.png

Features (muDM tile-geometry Parquet, range-readable):

https://ngrf.mudm.io/tiles2d/xenium-kidney/features.parquet/

Machine descriptors: tilejson.json · croissant.json · full access guide