muDM Data
Public 2D and 3D spatial datasets encoded with the muDM data model — explore them interactively and reproduce how they were built.
Featured
BANC — Drosophila central nervous system connectome (~135k neurons) 3D
The complete BANC connectome — ~135,000 neurons spanning the whole adult FEMALE Drosophila central nervous system (brain + ventral nerve cord) in one specimen.
FlyWire — Drosophila brain connectome (~139k neurons) 3D
The complete FlyWire connectome of an adult female fruit-fly brain — ~139,000 reconstructed neurons across every super class, from the FAFB serial-section EM volume.
Hemibrain — Drosophila central brain connectome (~25k neurons) 3D
Dense FIB-SEM reconstruction of 25,000 neurons from the Janelia FlyEM Hemibrain connectome of the adult female Drosophila central brain.
HRA — Human male body (3D reference anatomy) 3D
761 anatomical structures of the male body, assembled in the HRA Common Coordinate Framework.
MaleCNS — Drosophila central nervous system connectome (~177k neurons) 3D
The complete MaleCNS connectome — ~176,570 neurons spanning the entire adult MALE Drosophila central nervous system (brain + optic lobes + VNC) in one specimen.
Xenium — Human Brain Glioblastoma (GBM, FFPE, custom add-on) 2D
FFPE human brain glioblastoma section profiled by 10x Genomics Xenium In Situ spatial transcriptomics.
Xenium — Human Breast Invasive Ductal Carcinoma (IDC, FFPE, full slide) 2D
10x Xenium spatial transcriptomics of FFPE human breast cancer (Janesick et al. 2023) — full whole-slide section.
Xenium Protein — Human Kidney Cancer (FFPE, Multi-Tissue & Cancer panel) 2D
10x Xenium In Situ (transcriptomics + protein) of FFPE human kidney (renal cell carcinoma).
Xenium — Mouse Brain (TgCRND8 Alzheimer's model, FFPE, custom add-on, coronal, 17.9 months) 2D
TgCRND8 Alzheimer's amyloidosis mouse brain at 17.9 months, FFPE, profiled by Xenium with the Mouse Brain panel plus an Alzheimer's add-on.
Xenium — Mouse Brain (non-diseased, fresh-frozen, coronal) 2D
10x Xenium spatial transcriptomics of a fresh-frozen adult mouse brain coronal section (248-gene panel).
Xenium — Human Tonsil (reactive follicular hyperplasia, FFPE, Multi-Tissue & Cancer panel) 2D
FFPE human tonsil section with reactive follicular hyperplasia, profiled by 10x Genomics Xenium in-situ spatial transcriptomics.
How these were made
Each dataset is generated from public source data with the muDM tooling and a reproducible command.
See the generation scripts in scripts/.